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1

CRISPR/Cas9-Mediated Phage Resistance Is Not Impeded by the DNA Modifications of Phage T4

Yaung, Stephanie J., Esvelt, Kevin M., Church, George M., Xu, Shuang-yong

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 767 KB

english, 2014

2

Polymerase-Endonuclease Amplification Reaction (PEAR) for Large-Scale Enzymatic Production of Antisense Oligonucleotides

Wang, Xiaolong, Gou, Deming, Xu, Shuang-yong, Antopolsky, Maxim

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 509 KB

english, 2010

3

Balancing Herbal Medicine and Functional Food for Prevention and Treatment of Cardiometabolic Diseases through Modulating Gut Microbiota

Lyu, Ming, Wang, Yue-fei, Fan, Guan-wei, Wang, Xiao-ying, Xu, Shuang-yong, Zhu, Yan

Journal:

Frontiers in Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 942 KB

english, 2017

4

Targeting DNA 5mCpG sites with chimeric endonucleases

Alexey Fomenkov, Priscilla Hiu-Mei Too, Siu-Hong Chan, Romas Vaisvila, Beth Ann Cantin, Laurie Mazzola, Vernissia Tam, Shuang-yong Xu

Journal:

Analytical Biochemistry

Année:

2008

Langue:

english

Fichier:

PDF, 709 KB

english, 2008

5

TspMI, a thermostable isoschizomer ofXmaI (5′C/CCGGG3′): characterization and single molecule imaging with DNA

Vijay Parashar, Neena Capalash, Shuang-yong Xu, Yasushi Sako, Prince Sharma

Journal:

Applied Microbiology and Biotechnology

Année:

2006

Langue:

english

Fichier:

PDF, 237 KB

english, 2006

6

Characterization of MspNI (G/GWCC) and MspNII (R/GATCY), novel thermostable Type II restriction endonucleases fromMeiothermussp., isoschizomers of AvaII and BstYI

Richa Gupta, Shuang-Yong Xu, Prince Sharma, Neena Capalash

Journal:

Molecular Biology Reports

Année:

2012

Langue:

english

Fichier:

PDF, 361 KB

english, 2012

7

Implications for Switching Restriction Enzyme Specificities from the Structure of BstYI Bound to a BglII DNA Sequence

Sharon A. Townson, James C. Samuelson, Shuang-yong Xu, Aneel K. Aggarwal

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 768 KB

english, 2005

8

Crystal Structure of the Restriction-Modification System Control Element C.BclI and Mapping of Its Binding Site

Michael R. Sawaya, Zhenyu Zhu, Fana Mersha, Siu-hong Chan, Rajesh Dabur, Shuang-yong Xu, Ganesaratnam K. Balendiran

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 708 KB

english, 2005

9

BstYI Bound to Noncognate DNA Reveals a “Hemispecific” Complex: Implications for DNA Scanning

Sharon A. Townson, James C. Samuelson, Yongming Bao, Shuang-yong Xu, Aneel K. Aggarwal

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2007

10

Structures of the Rare-Cutting Restriction Endonuclease NotI Reveal a Unique Metal Binding Fold Involved in DNA Binding

Abigail R. Lambert, Django Sussman, Betty Shen, Robert Maunus, Jay Nix, James Samuelson, Shuang-Yong Xu, Barry L. Stoddard

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 2.23 MB

english, 2008

11

Unusual Target Site Disruption by the Rare-Cutting HNH Restriction Endonuclease PacI

Betty W. Shen, Daniel F. Heiter, Siu-Hong Chan, Hua Wang, Shuang-Yong Xu, Richard D. Morgan, Geoffrey G. Wilson, Barry L. Stoddard

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2010

12

Restriction Enzyme BsoBI–DNA Complex: A Tunnel for Recognition of Degenerate DNA Sequences and Potential Histidine Catalysis

Mark J van der Woerd, John J Pelletier, Shuang-yong Xu, Alan M Friedman

Journal:

Année:

2001

Langue:

english

Fichier:

PDF, 610 KB

english, 2001

13

Cloning of NruI and Sbo13I restriction and modification sstems inE. coliand amino acid sequence comparison of M.NruI and M.Sbo13I with other amino-methyltransferases

Zhenyu Zhu, Chandra Sekhar Pedamallu, Alexey Fomenkov, Jack Benner, Shuang-yong Xu

Journal:

BMC Research Notes

Année:

2010

Langue:

english

Fichier:

PDF, 2.50 MB

english, 2010

14

Isolation of temperature-sensitive mutants of the BamHI restriction endonuclease

Alexey Fomenkov, Shuang-yong Xu

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 717 KB

english, 1995

15

Nucleotide sequence of a small plasmid isolated from Acetobacter pasteurianus

Alexey Fomenkov, Jian-ping Xiao, Shuang-yong Xu

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 147 KB

english, 1995

16

Cloning of a gene from Thermus filiformis and characterization of the thermostable nuclease

Alexey Fomenkov, Shuang-yong Xu

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 470 KB

english, 1995

17

Glucocorticoid Receptor-like Zn(Cys)4 Motifs in BslI Restriction Endonuclease

Éva Scheuring Vanamee, Pei-chung Hsieh, Zhenyu Zhu, David Yates, Elspeth Garman, Shuang-yong Xu, Aneel K Aggarwal

Journal:

Journal of Molecular Biology

Année:

2003

Langue:

english

Fichier:

PDF, 358 KB

english, 2003

18

Engineering Strand-specific DNA Nicking Enzymes from the Type IIS Restriction Endonucleases BsaI, BsmBI, and BsmAI

Zhenyu Zhu, James C Samuelson, Jing Zhou, Andrew Dore, Shuang-yong Xu

Journal:

Journal of Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2004

19

Crystal Structure of BstYI at 1.85 Å Resolution: A Thermophilic Restriction Endonuclease with Overlapping Specificities to BamHI and BglII

Sharon A. Townson, James C. Samuelson, Éva Scheuring Vanamee, Thomas A. Edwards, Carlos R. Escalante, Shuang-yong Xu, Aneel K. Aggarwal

Journal:

Journal of Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2004

20

Structural Insights into the Assembly and Shape of Type III Restriction–Modification (R–M) EcoP15I Complex by Small-Angle X-ray Scattering

Yogesh K. Gupta, Lin Yang, Siu-Hong Chan, James C. Samuelson, Shuang-yong Xu, Aneel K. Aggarwal

Journal:

Journal of Molecular Biology

Année:

2012

Langue:

english

Fichier:

PDF, 1023 KB

english, 2012

21

Cloning of Nt.CviQII nicking endonuclease and its cognate methyltransferase: M.CviQII methylates AG sequences

Siu-hong Chan, Zhenyu Zhu, David D. Dunigan, James L. Van Etten, Shuang-yong Xu

Journal:

Protein Expression and Purification

Année:

2006

Langue:

english

Fichier:

PDF, 626 KB

english, 2006

22

Expression and purification of BmrI restriction endonuclease and its N-terminal cleavage domain variants

Yongming Bao, Lauren Higgins, Penghua Zhang, Siu-hong Chan, Sophie Laget, Suzanne Sweeney, Keith Lunnen, Shuang-yong Xu

Journal:

Protein Expression and Purification

Année:

2008

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2008

23

Directed Evolution of Restriction Endonuclease BstYI to Achieve Increased Substrate Specificity

James C. Samuelson, Shuang-yong Xu

Journal:

Journal of Molecular Biology

Année:

2002

Langue:

english

Fichier:

PDF, 396 KB

english, 2002

24

Isolation of BsoBI Restriction Endonuclease Variants with Altered Substrate Specificity

Zhenyu Zhu, Jing Zhou, Alan M. Friedman, Shuang-yong Xu

Journal:

Journal of Molecular Biology

Année:

2003

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2003

25

PspGI, a Type II Restriction Endonuclease from the Extreme Thermophile Pyrococcus sp.: Structural and Functional Studies to Investigate an Evolutionary Relationship with Several Mesophilic Restriction Enzymes

Vera Pingoud, Charlotte Conzelmann, Steffen Kinzebach, Anna Sudina, Valeri Metelev, Elena Kubareva, Janusz M Bujnicki, Rudi Lurz, Gerhild Lüder, Shuang-Yong Xu, Alfred Pingoud

Journal:

Journal of Molecular Biology

Année:

2003

Langue:

english

Fichier:

PDF, 2.47 MB

english, 2003

26

Molecular cloning and expression of NlaIII restriction-modification system in E. coli

Richard D. Morgan, Russell R. Camp, Geoffrey G. Wilson, Shuang-yong Xu

Journal:

Année:

1996

Langue:

english

Fichier:

PDF, 403 KB

english, 1996

27

Cloning and expression of AatII restriction-modification system in Escherichia coli

Donald O Nwankwo, Robert E Maunus, Shuang-yong Xu

Journal:

Année:

1997

Langue:

english

Fichier:

PDF, 491 KB

english, 1997

28

Overexpression of BsoBI restriction endonuclease in E. coli, purification of the recombinant BsoBI, and identification of catalytic residues of BsoBI by random mutagenesis

Hong Ruan, Keith D Lunnen, John J Pelletier, Shuang-yong Xu

Journal:

Année:

1997

Langue:

english

Fichier:

PDF, 128 KB

english, 1997

29

Identification of a thermophilic plasmid origin and its cloning within a new Thermus-E. coli shuttle vector

Jay Wayne, Shuang-yong Xu

Journal:

Année:

1997

Langue:

english

Fichier:

PDF, 342 KB

english, 1997

30

The Tsp45I restriction–modification system is plasmid-borne within its thermophilic host

Jay Wayne, Megan Holden, Shuang-yong Xu

Journal:

Année:

1997

Langue:

english

Fichier:

PDF, 194 KB

english, 1997

31

Structure of the bacteriophage λ cohesive end site: Genetic analysis of the site (cosN) at which nicks are introduced by terminase

Shuang-yong Xu, Michael Feiss

Journal:

Journal of Molecular Biology

Année:

1991

Langue:

english

Fichier:

PDF, 6.08 MB

english, 1991

32

The last duplex base-pair of the phage λ chromosome: Involvement in packaging, ejection and routing of λ DNA

Shuang-yong Xu, Michael Feiss

Journal:

Journal of Molecular Biology

Année:

1991

Langue:

english

Fichier:

PDF, 9.40 MB

english, 1991

33

A squaraine based fluorescent probe for mercury ion via coordination induced deaggregation signaling

Lin, Shuang-Yong, Zhu, Hui-Jun, Xu, Wen-Jian, Wang, Gui-Mei, Fu, Nan-Yan

Journal:

Chinese Chemical Letters

Année:

2014

Langue:

english

Fichier:

PDF, 1017 KB

english, 2014

34

A rapid method for preparing phage λ DNA from agar plate lysates

Shuang-Yong Xu,

Journal:

Genetic Analysis Techniques

Année:

1986

Langue:

english

Fichier:

PDF, 244 KB

english, 1986

35

Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI

Horton, John R., Nugent, Rebecca L., Li, Andrew, Mabuchi, Megumu Yamada, Fomenkov, Alexey, Cohen-Karni, Devora, Griggs, Rose M., Zhang, Xing, Wilson, Geoffrey G., Zheng, Yu, Xu, Shuang-yong, Cheng, Xi

Journal:

Scientific Reports

Année:

2014

Langue:

english

Fichier:

PDF, 2.16 MB

english, 2014

36

Recognition of 5-Hydroxymethylcytosine by the Uhrf1 SRA Domain

Frauer, Carina, Hoffmann, Thomas, Bultmann, Sebastian, Casa, Valentina, Cardoso, M. Cristina, Antes, Iris, Leonhardt, Heinrich, Xu, Shuang-yong

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2011

37

Amp-PCR: Combining a Random Unbiased Phi29-Amplification with a Specific Real-Time PCR, Performed in One Tube to Increase PCR Sensitivity

Erlandsson, Lena, Nielsen, Lars Peter, Fomsgaard, Anders, Xu, Shuang-yong

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 611 KB

english, 2010

38

Expression and purification of a single-chain Type IV restriction enzyme Eco94GmrSD and determination of its substrate preference

He, Xinyi, Hull, Victoria, Thomas, Julie A., Fu, Xiaoqing, Gidwani, Sonal, Gupta, Yogesh K., Black, Lindsay W., Xu, Shuang-yong

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 3.83 MB

english, 2015

39

Deep Sequencing of Human Nuclear and Cytoplasmic Small RNAs Reveals an Unexpectedly Complex Subcellular Distribution of miRNAs and tRNA 3′ Trailers

Liao, Jian-You, Ma, Li-Ming, Guo, Yan-Hua, Zhang, Yu-Chan, Zhou, Hui, Shao, Peng, Chen, Yue-Qin, Qu, Liang-Hu, Xu, Shuang-yong

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2010

40

Overexpression, purification and crystallization of Bam HI endonuclease

Jack, William E., Greenough, Lucia, Dorner, Lydia F., Xu, Shuang-yong, Strzelecka, Teresa, Aggarwal, Aneel K., Schildkraut, Ira

Journal:

Nucleic Acids Research

Année:

1991

Langue:

english

Fichier:

PDF, 809 KB

english, 1991

41

The ‘endo-blue method’ for direct cloning of restriction endonuclease genes in E.coli

Fomenkov, Alexey, Xiao, Jian-ping, Dila, Deborah, Raleigh, Elisabeth, Xu, Shuang-yong

Journal:

Nucleic Acids Research

Année:

1994

Langue:

english

Fichier:

PDF, 1.72 MB

english, 1994

42

Complete Genome Sequence Analysis of Bacillus subtilis T30

Xu, Shuang-yong, Boitano, Matthew, Clark, Tyson A., Vincze, Tamas, Fomenkov, Alexey, Kumar, Sanjay, Too, Priscilla Hiu-Mei, Gonchar, Danila, Degtyarev, Sergey K., Roberts, Richard J.

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 155 KB

english, 2015

43

Sequence-specific DNA nicking endonucleases

Xu, Shuang-yong

Journal:

BioMolecular Concepts

Année:

2015

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2015

44

The MspJI family of modification-dependent restriction endonucleases for epigenetic studies

Devora Cohen-Karni, Derrick Xu, Lynne Apone, Alexey Fomenkov, Zhiyi Sun, Paul J. Davis, Shannon R. Morey Kinney, Megumu Yamada-Mabuchi, Shuang-yong Xu, Theodore Davis, Sriharsa Pradhan, Richard J. Rob

Journal:

Proceedings of the National Academy of Sciences

Année:

2011

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2011

45

Expression and purification of the modification-dependent restriction enzyme BisI and its homologous enzymes

Xu, Shuang-yong, Klein, Pernelle, Degtyarev, Sergey Kh., Roberts, Richard J.

Journal:

Scientific Reports

Année:

2016

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2016

46

Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA

Tamulaitiene, Giedre, Jovaisaite, Virginija, Tamulaitis, Gintautas, Songailiene, Inga, Manakova, Elena, Zaremba, Mindaugas, Grazulis, Saulius, Xu, Shuang-yong, Siksnys, Virginijus

Journal:

Nucleic Acids Research

Année:

2016

Langue:

english

Fichier:

PDF, 3.30 MB

english, 2016

47

Comparative Linkage Meta-Analysis Reveals Regionally-Distinct, Disparate Genetic Architectures: Application to Bipolar Disorder and Schizophrenia

Tang, Brady, Thornton-Wells, Tricia, Askland, Kathleen D., Xu, Shuang-yong

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2011

48

Characterization of cleavage intermediate and star sites of RM.Tth111II

Zhu, Zhenyu, Guan, Shengxi, Robinson, Derek, Fezzazi, Hanna El, Quimby, Aine, Xu, Shuang-yong

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 4.11 MB

english, 2015

49

Restriction Cascade Exponential Amplification (RCEA) assay with an attomolar detection limit: a novel, highly specific, isothermal alternative to qPCR

Ghindilis, Andrey L., Smith, Maria W., Simon, Holly M., Seoudi, Ihab A., Yazvenko, Nina S., Murray, Iain A., Fu, Xiaoqing, Smith, Kenneth, Jen-Jacobson, Linda, Xu, Shuang-yong

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 798 KB

english, 2015

50

Erasure of Tet-Oxidized 5-Methylcytosine by a SRAP Nuclease

Kweon, Soo-Mi, Zhu, Bing, Chen, Yibu, Aravind, L., Xu, Shuang-Yong, Feldman, Douglas E.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 4.10 MB

english, 2017